| name: post_fimo |
| task_type: fimo |
|
|
| fimo_out_dir: dpacman/data_files/processed/fimo/fimo_out_q |
| processed_output_csv: dpacman/data_files/processed/fimo/post_fimo/fimo_hits_only/remap2022_crm_fimo_output_q_processed.csv |
| json_dir: dpacman/data_files/raw/genomes/hg38 |
| idmap_path: dpacman/data_files/raw/remap/idmapping_reviewed_true_2025_08_15.tsv |
| remap_path: /vast/projects/pranam/lab/sophie/DPACMAN/dpacman/data_files/processed/fimo/remap2022_crm_fimo_input.csv |
|
|
| jaspar_boost: 333 |
|
|
| keep_fimo_only: true |
|
|
| seeds: [0] |
| max_protein_len: 1998 |
|
|
| debug: false |
